
#!/bin/sh
if [ ! "$SAS_ODFDIR" ]; then
echo ""
echo "Please set the SAS_ODFDIR environment variable to point at the directory"
echo "containing the ODF files for this observation."
echo ""
exit 1
fi
# # [INFO] [2024-11-30T23:48:10] Module name: VerifyODF
# # [INFO] [2024-11-30T23:48:10] Instrument: all
# # [INFO] [2024-11-30T23:48:10] Stream no.: 0001
# # [INFO] [2024-11-30T23:48:10] Module version number: 1.18
# # [INFO] [2024-11-30T23:48:10] Version of odfingest used was 3.33.1
# # [INFO] [2024-11-30T23:48:10] Module name: MakeCIF
# # [INFO] [2024-11-30T23:48:10] Instrument: all
# # [INFO] [2024-11-30T23:48:10] Stream no.: 0001
# # [INFO] [2024-11-30T23:48:10] Module version number: 1.23
# # [INFO] [2024-11-30T23:48:10] Observation start defined as >2020-07-19T15:50:21.000<
# # [INFO] [2024-11-30T23:48:10] Processing date defined as >2024-12-01T00:48:10<
# [COMMAND] [2024-11-30T23:48:10]
export SAS_MEMORY_MODEL=high
# [COMMAND] [2024-11-30T23:48:10]
export SAS_RAND_SEED=0863801001
# # [INFO] [2024-11-30T23:48:10] ## DEBUG ModuleResources: SAS_RAND_SEED set: 0863801001
# [COMMAND] [2024-11-30T23:48:10]
cifbuild analysisdate=2024-12-01T00:48:10 calindexset=product/P0863801001OBX000CALIND0000.FIT fullpath=no \
observationdate=2020-07-19T15:50:21.000 withccfpath=no -w 10
# # [OUTPUT] [2024-11-30T23:48:42]
# # [INFO] [2024-11-30T23:48:42] Task Run Time cifbuild 32.2805671691895s
#
# [COMMAND] [2024-11-30T23:48:42]
export SAS_MEMORY_MODEL=high
# [COMMAND] [2024-11-30T23:48:42]
export SAS_RAND_SEED=0863801001
# # [INFO] [2024-11-30T23:48:42] ## DEBUG ModuleResources: SAS_RAND_SEED set: 0863801001
# [COMMAND] [2024-11-30T23:48:42]
addattribute attributecomment="\"Telescope (mission) name\" \"Date observations ended\" \"Observation identifier\" \"Observation \
mode (pointing or slew)\" \"Name of PI\" \"Name of observed object\" \"DEC of instrument pointing\" \"RA of instrument pointing \
(degrees)\" \"Date observations were made\"" attributename="TELESCOP DATE-END OBS_ID OBS_MODE OBSERVER OBJECT DEC_PNT RA_PNT \
DATE-OBS" attributetype="string string string string string string real real string" realvalue="-41.3979389 212.0422905" \
set=product/P0863801001OBX000CALIND0000.FIT stringvalue="\"XMM\" \"2020-07-19T17:22:33.000\" \"0863801001\" \"POINTED\" \"Dr Simon \
Joyce\" \"PDS 70\" \"2020-07-19T15:50:21.000\"" -w 10
# # [OUTPUT] [2024-11-30T23:48:42]
# # [INFO] [2024-11-30T23:48:42] Task Run Time addattribute 0.0361900329589844s
#
# [COMMAND] [2024-11-30T23:48:42]
cp /scratch/226154.1.all.q/xmm/ppsprod/229299/product/P0863801001OBX000CALIND0000.FIT \
/scratch/226154.1.all.q/xmm/ppsprod/229299/intermediate/ccf.cif
# # [INFO] [2024-11-30T23:48:42] System RV 0
# # [INFO] [2024-11-30T23:48:42] Module name: GlobalHK
# # [INFO] [2024-11-30T23:48:42] Instrument: all
# # [INFO] [2024-11-30T23:48:42] Stream no.: 0001
# # [INFO] [2024-11-30T23:48:42] Module version number: 1.81
# [COMMAND] [2024-11-30T23:48:42]
export SAS_MEMORY_MODEL=high
# [COMMAND] [2024-11-30T23:48:42]
export SAS_RAND_SEED=0863801001
# # [INFO] [2024-11-30T23:48:42] ## DEBUG ModuleResources: SAS_RAND_SEED set: 0863801001
# [COMMAND] [2024-11-30T23:48:42]
preqgti preqgtifile=intermediate/GlobalHK-all-1-Attitude_GTI-X00000000000000.fits -w 10
# # [OUTPUT] [2024-11-30T23:48:44] ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566762.184\
#     which is more than 20 s outside the period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566762.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566763.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566763.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566764.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566764.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566765.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566765.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 21 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566766.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 22 s away).
# ** preqgti::atthkgen: warning (NoAttitude), The attitude was requested for time 711566766.184 which is more than 20 s outside the\
#     period for which the attitude is known (closest time is 22 s away).
# ** preqgti: warning (SummaryOfWarnings), 
# warning NoAttitude silently occurred 45038 times 
# # [INFO] [2024-11-30T23:48:44] Task Run Time preqgti 1.32081985473633s
#
# [COMMAND] [2024-11-30T23:48:44]
export SAS_MEMORY_MODEL=high
# [COMMAND] [2024-11-30T23:48:44]
export SAS_RAND_SEED=0863801001
# # [INFO] [2024-11-30T23:48:44] ## DEBUG ModuleResources: SAS_RAND_SEED set: 0863801001
# [COMMAND] [2024-11-30T23:48:44]
atthkgen atthkset=product/P0863801001OBX000ATTTSR0000.FIT preqgtifile=intermediate/GlobalHK-all-1-Attitude_GTI-X00000000000000.fits \
timestep=1 withpreqgti=no -w 10
# # [OUTPUT] [2024-11-30T23:48:44]
# # [INFO] [2024-11-30T23:48:44] Task Run Time atthkgen 0.172046184539795s
#
# [COMMAND] [2024-11-30T23:48:44]
export SAS_MEMORY_MODEL=high
# [COMMAND] [2024-11-30T23:48:44]
export SAS_RAND_SEED=0863801001
# # [INFO] [2024-11-30T23:48:44] ## DEBUG ModuleResources: SAS_RAND_SEED set: 0863801001
# [COMMAND] [2024-11-30T23:48:44]
orbit outfile=product/P0863801001OBX000ORBTSR0000.FIT timestep=1 useobsid=yes -w 10
# # [OUTPUT] [2024-11-30T23:48:44] orbit:- Output FITS Orbit timeseries: product/P0863801001OBX000ORBTSR0000.FIT
# orbit:- Binsize (timestep) of output): 1
# orbit:- Use OBSID data or whole orbit? T 
# # [INFO] [2024-11-30T23:48:44] Task Run Time orbit 0.219702959060669s
#
# [COMMAND] [2024-11-30T23:48:44]
export SAS_MEMORY_MODEL=high
# [COMMAND] [2024-11-30T23:48:44]
export SAS_RAND_SEED=0863801001
# # [INFO] [2024-11-30T23:48:44] ## DEBUG ModuleResources: SAS_RAND_SEED set: 0863801001
# [COMMAND] [2024-11-30T23:48:44]
radmonfix output=product/P0863801001OBX000RADMON0000.FIT radmonlist="odf/3775_0863801001_RMX00100ECX.FIT \
odf/3775_0863801001_RMX00200ECX.FIT" withoutputfile=yes -w 10
# # [OUTPUT] [2024-11-30T23:48:44] ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847097.9 which\
#     is outside the time correlation data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted\
#     with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847101.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847105.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847109.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847113.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847117.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847121.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847125.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847129.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# ** radmonfix: warning (Extrapolation), Evaluating OBT-MET fit polynomial at x=182847133.9 which is outside the time correlation\
#     data abscissa range [182848432.9, 182855723.2] - result of extrapolation might be afflicted with large numerical uncertainty.
# radmonfix:- Adding 1792 counts rows from row 479
# radmonfix:- Setting DATE-END...
# ** radmonfix: warning (SummaryOfWarnings), 
# warning Extrapolation silently occurred 388 times 
# # [INFO] [2024-11-30T23:48:44] Task Run Time radmonfix 0.146649122238159s
#
# [COMMAND] [2024-11-30T23:48:44]
cp /lhome/jperea/ppsdev/pcms3/src/pipeline/etc/EPICModes.fits \
/scratch/226154.1.all.q/xmm/ppsprod/229299/intermediate/GlobalHK-all-1-Observing_modes_Pileup_and_OoT_data-X00000000000000.fits
# # [INFO] [2024-11-30T23:48:44] System RV 0
# # [INFO] [2024-11-30T23:48:44] Copied EPIC Observing modes table, Pileup data and OoT data table in place
# [COMMAND] [2024-11-30T23:48:44]
cp /lhome/jperea/ppsdev/pcms3/src/pipeline/etc/ecfs.fits \
/scratch/226154.1.all.q/xmm/ppsprod/229299/intermediate/GlobalHK-all-1-Energy_Conversion_Factors-X00000000000000.fits
# # [INFO] [2024-11-30T23:48:44] System RV 0
# [COMMAND] [2024-11-30T23:48:44]
cp /lhome/jperea/ppsdev/pcms3/src/pipeline/etc/ecfgrid.fits.gz \
/scratch/226154.1.all.q/xmm/ppsprod/229299/intermediate/GlobalHK-all-1-Energy_Conversion_Factors_Grid-X00000000000000.fits
# # [INFO] [2024-11-30T23:48:44] System RV 0
# [COMMAND] [2024-11-30T23:48:44]
cp /lhome/jperea/ppsdev/pcms3/src/pipeline/etc/fluxgrid.fits.gz \
/scratch/226154.1.all.q/xmm/ppsprod/229299/intermediate/GlobalHK-all-1-Flux_Grid-X00000000000000.fits
# # [INFO] [2024-11-30T23:48:44] System RV 0
# # [INFO] [2024-11-30T23:48:44] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:44] Instrument: emos2
# # [INFO] [2024-11-30T23:48:44] Stream no.: 0001
# # [INFO] [2024-11-30T23:48:44] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:44] Checking exposure S002 for processability
# # [INFO] [2024-11-30T23:48:44] Filter: CalClosed
# # [INFO] [2024-11-30T23:48:44] Instrument mode: PrimeFullWindow
# # [INFO] [2024-11-30T23:48:44] Exposure duration: 5309
# # [INFO] [2024-11-30T23:48:44] Exposure ignored due to invalid or unsupported filter
# # [INFO] [2024-11-30T23:48:44] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:44] Instrument: epn
# # [INFO] [2024-11-30T23:48:44] Stream no.: 0001
# # [INFO] [2024-11-30T23:48:44] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:44] Checking exposure S003 for processability
# # [INFO] [2024-11-30T23:48:44] Filter: CalClosed
# # [INFO] [2024-11-30T23:48:44] Instrument mode: PrimeFullWindow
# # [INFO] [2024-11-30T23:48:44] Exposure duration: 3461
# # [INFO] [2024-11-30T23:48:44] Exposure ignored due to invalid or unsupported filter
# # [INFO] [2024-11-30T23:48:44] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:44] Instrument: epn
# # [INFO] [2024-11-30T23:48:44] Stream no.: 0002
# # [INFO] [2024-11-30T23:48:44] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:44] Checking exposure U002 for processability
# # [INFO] [2024-11-30T23:48:44] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0003
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U003 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0004
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U004 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0005
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U005 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0006
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U006 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0007
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U007 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: emos1
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0001
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure S001 for processability
# # [INFO] [2024-11-30T23:48:45] Filter: CalClosed
# # [INFO] [2024-11-30T23:48:45] Instrument mode: PrimeFullWindow
# # [INFO] [2024-11-30T23:48:45] Exposure duration: 5330
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to invalid or unsupported filter
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0008
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U008 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0009
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U009 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0010
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U010 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0011
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U011 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0012
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U012 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0013
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U013 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
# # [INFO] [2024-11-30T23:48:45] Module name: ExpChooser
# # [INFO] [2024-11-30T23:48:45] Instrument: epn
# # [INFO] [2024-11-30T23:48:45] Stream no.: 0014
# # [INFO] [2024-11-30T23:48:45] Module version number: 1.38
# # [INFO] [2024-11-30T23:48:45] Checking exposure U700 for processability
# # [INFO] [2024-11-30T23:48:45] Exposure ignored due to lack of event files
